Kiwifruit Expression Data

Overview of this BioProject:

BioProjectPRJNA436459
Since 2007, bacterial canker caused by Pseudomonas syringae pv. actinidiae (Psa) has become a pandemic disease leading to important economic losses every country where kiwifruit are widely cultivated. To elucidate early molecular reaction of kiwifruit plants (Actinidia chinensis var. chinensis) to Psa infection, a RNAseq analysis was performed during the different phases of the infection process, from the epiphytic growth till the endophytic invasion. Our work provides an in-depth description of the plant molecular reactions to Psa in the key steps of infection process and the genes related to ASM-induced resistance.These knowledges leading to a better understanding of kiwifruit defensive mechanisms provides robust tools for improving breeding for resistance and developing effective control strategies in open field.

Properties this BioBroject:

Property NameValue
Data typeTranscriptome or Gene expression
Sample scopeMulti-species
MaterialTranscriptome
CaptureRandomSurvey

BioSamples of this BioProject:

BioSampleOrganismDescription
ASMkiwifruittreated with ASM and 15 days before the infection ; cultivar : chinensis; dev_stage : 15 days before the infection; tissue : all plant; treatment : 1.7mM Acibenzolar-S-methyl; ;
ASMI3kiwifruittreated with ASM and 3h post inoculation of Psa ; cultivar : chinensis; dev_stage : 3h post inoculation; tissue : all plant; treatment : 1.7mM Acibenzolar-S-methyl; Pseudomonas syringae pv. actinidiae (Psa; strain CFBP7286-GFPuv ) inoculation;
ASMI24kiwifruittreated with ASM and 24h post inoculation of Psa ; cultivar : chinensis; dev_stage : 24h post inoculation; tissue : all plant; treatment : 1.7mM Acibenzolar-S-methyl; Pseudomonas syringae pv. actinidiae (Psa; strain CFBP7286-GFPuv ) inoculation;
ASMI48kiwifruittreated with ASM and 48h post inoculation of Psa ; cultivar : chinensis; dev_stage : 48h post inoculation; tissue : all plant; treatment : 1.7mM Acibenzolar-S-methyl; Pseudomonas syringae pv. actinidiae (Psa; strain CFBP7286-GFPuv ) inoculation;
HealtyControlkiwifruithealty plant as mock ; cultivar : chinensis; dev_stage : healty plant; tissue : all plant; treatment : mock-inoculated plants were immersed in sterile 10mM MgSO4;
I3kiwifruit3h post inoculation of Psa ; cultivar : chinensis; dev_stage : 3h post inoculation; tissue : all plant; treatment : Pseudomonas syringae pv. actinidiae (Psa; strain CFBP7286-GFPuv ) inoculation;
I24kiwifruit24h post inoculation of Psa ; cultivar : chinensis; dev_stage : 24h post inoculation; tissue : all plant; treatment : Pseudomonas syringae pv. actinidiae (Psa; strain CFBP7286-GFPuv ) inoculation;
I48kiwifruit48h post inoculation of Psa ; cultivar : chinensis; dev_stage : 48h post inoculation; tissue : all plant; treatment : Pseudomonas syringae pv. actinidiae (Psa; strain CFBP7286-GFPuv ) inoculation;